You know that smug feeling when you sneak veggies into something and no one notices? These protein chocolate and zucchini muffins are rich, fudgy, and secretly packed with zucchini and 9g of protein each. This batch makes 12 large muffins that freeze well, making them an easy option for breakfast or snack prep.

If you haven't noticed by now, I'm a huge fan of sneaking in some veggies to sweet treats. These muffins have a similar base to my carrot banana muffins (which also have those secret veg ;))
The zucchini keeps the muffins soft without making them taste like vegetables - and once the cacao and chocolate chips are mixed in, you can't see it (or taste it!) The protein powder helps increase the protein content of these muffins. My personal preference is vegan protein powder because I've found it behaves most like flour in baked goods.
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Why you'll love this recipe
Secret veggies. Finely grated zucchini almost disappears into the chocolate batter while helping keep the muffins soft.
Rich chocolate flavour. Cacao, banana and optional chocolate chips make these taste much more like a chocolate muffin than a vegetable muffin.
Protein powder. Each muffin contains approximately 9g protein based on the current 12-muffin yield.
Ingredients

Butter. I recommend unsalted (but you can use salted if you want, this recipe isn't that strict). If you need dairy-free, swap for coconut-oil or a dairy-free butter.
Maple syrup. This will act as a natural sweetener with a caramely flavour. You can swap for golden syrup or honey (this will make the mixture slightly stickier though so coat your liners with oil well), but I wouldn't recommend swapping for dry sugars as I haven't tested this. I predict you won't have the same moistness because you're removing liquid.
Mashed banana. Banana provides both moisture and sweetness, which is particularly useful in protein muffins because protein powder can otherwise make the crumb dry. Applesauce can be substituted if you want to remove the banana undertone.
Zucchini. Finely grate the zucchini and lightly press or pat away the excess moisture rather than squeezing it completely dry. I found leaving a little moisture helps keep the muffins soft, while adding very wet zucchini can make the centres gummy. I use the same method in my protein banana zucchini bread.
Cacao powder. Cacao gives the muffins a deep chocolate flavour without adding additional sweetness (as sometimes it can be a bit much!).
Protein powder. You can use a neutral, vanilla or chocolate. I recommend vegan protein powder as it acts most similar to flour.
Please check the recipe card for full list of ingredients and quantity. See below for substitutions and variations.

Which protein powder works best?
I developed these muffins using vegan protein powder because I find it behaves more like flour and gives me a more predictable batter. Neutral, vanilla or chocolate all work depending on how strong you want the chocolate flavour.
I have also tested whey protein powder. It works, but I find it behaves differently in baking and can produce a slightly different texture or aftertaste, so vegan remains my preference here.
Protein powders absorb liquid differently between brands, so use the batter consistency as your guide. It should be thick and mousse-like but still easy to scoop into the muffin tin.
Substitutions and variations

Switch up the sweetness. Swap maple syrup for honey, agave, or date syrup. They'll all have a slightly different undertone but will act very similar to maple syrup in baking.
Add mix-ins. Try walnuts, shredded coconut, or dark chocolate chunks for extra texture. They are fantastic on their own, but if you need something with slightly more sweetness, I do recommend adding the dark chocolate chunks (especially if you're having this as an afternoon snack).
Without protein powder. If you want to make these without protein powder, use the tested flour replacement listed in the recipe notes. Expect a softer, more traditional muffin and a lower protein content per serve.
Cacao powder. Regular unsweetened cocoa powder also works and will usually give a slightly smoother, more familiar chocolate flavour. You can use a regular cocoa powder as well but it may make the muffins really sweet (which is why it's not my preference)
How to make chocolate zucchini muffins

Step 1: In a large bowl, using a stand mixer, hand mixer or whisk and beat together butter and maple syrup.
note - if you're in a cold climate, you might have to heat up the bowl. You may also be left with small solids (this is okay).

Step 2: Mix in eggs, mashed banana, baking powder, vanilla and salt.

Step 3: Mix in dry ingredients until combined and mousse-like. It should be thick and creamy

Step 4: Very finely shred zucchini and pat dry excess liquid (don't wring it dry!).
Gently fold zucchini and chocolate chips

Step 5: Line a muffin tray with muffin liners and add mixture using either a spoon or an icecream scoop. I use 2 icecream scoops for each muffin so they're about half full (large muffins).

Step 6: Very finely shred zucchini and pat dry excess liquid (don't wring it dry!).
Starting at the higher temperature helps the muffins rise quickly and develop a more rounded top. Reducing the temperature then allows the centres to finish cooking without the outside drying out.

Lauren's Top Tips
Don't stress about the zucchini. Most recipes will tell you to squeeze the zucchini really really well. I found just a light pat was fine and the muffins weren't dense or soggy (this helps because protein powder can dry them out)
Cool before removing. Let muffins rest in the tin for 5 minutes before transferring to a wire rack.
Rely on texture. Different protein powders can act differently. Once dry ingredients are added, it should be a thick mousse-like texture. Adjust with a tablespoon of milk at a time if the protein powder absorbs too much.
Meal prepping choc zucchini muffins
These muffins work particularly well for snack prep because they can be portioned individually and frozen without needing any assembly during the week. I usually keep a few accessible for the next couple of days and freeze the rest so the full batch does not gradually dry out in the fridge.
For a more substantial meal prepped breakfast, pair one or two muffins with Greek yogurt and fruit. For a snack box, add a muffin alongside berries, yogurt or nuts depending on what you have available.

Storing
Storing at room temperature. Keep muffins in an airtight container lined with paper towels at the bottom. Add another layer of paper towel on top before sealing. This absorbs excess moisture and prevents soggy tops. Store for 2-3 days max.
Storing in the fridge. If you need them to last longer (up to a week - they will firm up though), refrigerate in a paper towel-lined container. Let them cool completely before sealing-if they're even slightly warm, condensation will form, making the tops sticky.
Freezing. Wrap muffins individually in plastic wrap or store in freezer bags. They'll keep for up to 3 months. Thaw overnight in the fridge or microwave straight from frozen for 30 seconds.

Lauren's Meal Prep Tip
If you love that "freshly baked" vibe, pop refrigerated or thawed muffins in the microwave for 10-15 seconds or warm them in the oven for a few minutes.
You could also slice in half and air fry briefly for slightly crisp edges.
Leftover zucchini?
This recipe calls for 1 cup of shredded zucchini which is 1 small zucchini. If you have leftovers and want to use some more up, try my zucchini banana bread, zucchini baked oats or even my sheet pan breakfast burritos for a savoury option!

If you want more meal prep information, check out my Meal Prep for Beginners post and my Meal Prep Basics E-Book.
FAQs
Nope, promise! I even had kids try these muffins and they said they were delish (which is perfect because they're getting in those sneaky veggies while thinking they have a chocolatey treat).
The zucchini just adds moisture and softness-you won't taste it at all. In fact, if you didn't tell anyone, they'd never guess there were veggies hiding inside. The cacao powder completely masks the zucchini flavour.
Yes! You can replace the banana with unsweetened applesauce, pumpkin puree, or even mashed avocado. Each swap slightly changes the texture-applesauce makes them softer, while avocado makes them denser and fudgier. If using pumpkin puree, you may need an extra tablespoon of maple syrup for sweetness.
You want to remove excess surface moisture, but you do not need to wring the zucchini completely dry for this recipe. I finely grate mine and press it lightly with paper towel so it is damp rather than dripping.
If your zucchini is particularly large or watery, it may need a little more pressing. Small, firm zucchini generally contain less excess moisture.
Weigh the flour and protein powder where possible, keep some moisture in the zucchini and avoid baking until the skewer is completely dry. Protein powder continues absorbing moisture as the muffins cool, so slightly moist crumbs at the end of baking are ideal.
Different protein powders absorb liquid differently. If your batter looks significantly drier than the thick, mousse-like consistency shown in the photos, add milk one tablespoon at a time.
Recipe

Protein Chocolate and Zucchini Muffins
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Equipment
- Muffin Tin, (for 12, deep muffins)
- Silicone Muffin Liners, optional
- KitchenAid Stand Mixer, optional (or hand-mixer)
Ingredients
Wet Ingredients
- 115 g (½ cups) unsalted butter, room temperature, See Note 1
- 160 g (½ cups) maple syrup, See Note 2
- 2 eggs, room temperature
- 70 g (½ cups) banana, mashed, approx.1, See Note 3
- 60 g (¼ cups) milk, See Note 4
- 200 g (1 cups) zucchini, approx.1,
Dry Ingredients
- 120 g (1 cups) flour, all purpose
- 30 g (¼ cups) cacao powder
- 90 g (¾ cups) vegan protein powder, vanilla, neutral or chocolate, See Note 6
- 10 g (1 tablespoon) baking powder
- 3 g (1 teaspoon) salt
- 5 g (1 teaspoon) vanilla extract
- 80 g (½ cups) choc chips, optional
Instructions
Prepare
- Preheat oven to 210°C (410°F).
- Finely grate 200 g (1 cups) zucchini and remove surface moisture with a paper towel. Note - I found just a light pat was fine. Don't wring bone dry otherwise you'll get dry muffins.
- Mash 70 g (½ cups) banana
Mix ingredients
- In a large bowl, mix together 115 g (½ cups) unsalted butter and 160 g (½ cups) maple syrupnote - in cold climates, you might have small amounts of solid and may need to warm up the bowl in the microwave. Small amounts are fine, but if it's not mixing, it'll need to be warmer.
- Add 2 eggs, 70 g (½ cups) banana, 60 g (¼ cups) milk, 10 g (1 tablespoon) baking powder, 3 g (1 teaspoon) salt, 5 g (1 teaspoon) vanilla extract
- Mix in 120 g (1 cups) flour, 30 g (¼ cups) cacao powder, 90 g (¾ cups) vegan protein powder until just combined. It should be thick and creamy.
- (if using) gently fold in 80 g (½ cups) choc chips and the grated zucchini
Baking
- Line a muffin tray with muffin liners and add mixture to half way.
- Bake for 7 minutes then decrease heat to 175°C (350°F) for 17 minutes. You should get a mostly dry skewer with a couple of moist crumbs. Allow to cool once removed for 10 minutes.Starting at the higher temperature helps the muffins rise quickly and develop a more rounded top. Reducing the temperature then allows the centres to finish cooking without the outside drying out.






















Allie
Delicious and will make again! I used Just Ingredients Chocolate Whey Protein Powder because that's what I had on hand and they turned out great! Only other substitution was the suggested apple sauce instead of banana.
I did notice the directions didn't say when to mix in the zucchini so I just folded it in at the end with the chocolate chips.
athletelunchbox
Hi Allie, I'm so glad you enjoyed them and I'm glad the apple sauce worked out! Thank you for pointing that out, oversight on my part. You're definitely right to fold them in at the end with the chocolate chips.